I did some progress – tried another combination of coregistration and normalization methods and it seems to be working although the registration result is not so great – is there any way to manually correct the registration?
Another issue that came up afterwards is that the pre-recon of the electrodes i cannot get it to work either in the automatic or manual way. I tried focusing on the manual process, the red square and crosshair come up but the slice shown inside this popup windows is the lower postop slice where it does not contain the electrode so matlab afterwards goes into an endless loop of “lowering inital factor to -xxxxxx” and never finds it – i had to Ctrl+C after 1min
Nik
