VIM

[Josue]

Dear Andy,

I just wanted to know which of the leadDBS atlas includes the VIM as depicted in your recent preprint about “Connecivity predicts tremor improvement”.

Thank you!

[andreashorn]

…it’s the DISTAL (Medium) atlasset.

Best, Andy

[Josue]

Thank you Andy!

[Bassam]

Hi Josue,
An atlas containing the dbs sweet spot of the preprint, the vim and other related structures will be released in the LEAD DBS environment, however for the VIM, you can still find it in the DISTAL (Medium) atlas in LEAD DBS as Andy referred to.
Best, Bassam

[Josue]

Ok Bassam, Thank you!

[Josue]

Hi Andy,

I am sorry for not creating a new topic but the page is not letting me create a new one. I have a question, Is it possible to simulate electrodes without an actual trajectory? I have a bunch of anatomical points and would like to simulate electrodes on those points.

Thank you

[andreashorn]

Hi Josue,

there’s no official functionality for this. You’d need to manually edit the “markers” field in ea_reconstruction.mat. A few people have done this but it’s not really easy to explain and involves some Matlab skills :)
Hope you’ll be able to do it.

Best, Andy

[Josue]

Ok ANdy thank you

[Josue]

Hey Andy,

Sorry for posting here things unrelated with this post but I do not what happen with my account that wont let me to post new topics.

My problem is that whenever I’m trying to normalize, this error appears:

Undefined function ‘contains’ for input arguments of type ‘char’.

Error in ea_delete (line 18)
elseif contains(object{i}, ‘*’) && ~isempty(dir(object{i}))

Error in ea_autocoord (line 157)
ea_delete([options.root,options.patientname,filesep,options.prefs.gprenii]);

Error in ea_run (line 96)
ea_autocoord(options);

Error in lead_dbs>run_button_Callback (line 187)
ea_run(‘run’,options);

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in lead_dbs (line 43)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)lead_dbs(‘run_button_Callback’,hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback

I am using Matlab version 2015b, when I change ‘contains’ to ‘strfnd’, the error is:

Operands to the || and && operators must be convertible to logical scalar
values.

Error in ea_delete (line 18)
elseif strfind(object{i}, ‘*’) && ~isempty(dir(object{i}))

Error in ea_autocoord (line 157)
ea_delete([options.root,options.patientname,filesep,options.prefs.gprenii]);

Error in ea_run (line 96)
ea_autocoord(options);

Error in lead_dbs>run_button_Callback (line 187)
ea_run(‘run’,options);

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in lead_dbs (line 43)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)lead_dbs(‘run_button_Callback’,hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback

…And still it wont let me normalize the images.

Thank you for your help

Josue

[Author]

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