[loreent]

Dear lead-dbs team,

I have a general question regarding OSs, hope you can help. I have been running lead-dbs without problems on my local OS (macOS Sierra, v.10.12.6). Recently we have been trying to move the computations using lead-dbs connectome to our computing cluster for resting state analysis, but here the pipeline (Coregister with SPM/ANTs, Normalize with ANTs, functional connectivity processes) crashes.

Based on the error message (see below), I believe this has to do with an incompatibility stemming from the OS of the virtual machine I am using to push jobs onto the cluster, which runs CentOS 7. As far as I can tell, CentOS 7 only supports glibc 2.17. Can you please advise on whether the VM OS could indeed be the source of the problem, and if so, is a CentOS-compatible version available or planned?

Thank you for your help!
Best wishes, Loreen

Here is the error message I received:

Done preprocessing fMRI data.
No timecourses found, processing…
~/lead/ext_libs/ANTs/antsApplyTransforms.glnxa64: /lib64/libc.so.6: version `GLIBC_2.18′ not found (required by ~/lead/ext_libs/support/libstdc++.so.6)

Error using copyfile
cp: der Aufruf von stat für
“~/001/templates/labeling/wrisk_parcel.nii”
ist nicht möglich: Datei oder Verzeichnis nicht gefunden

Error in ea_warp_parcellation (line 65)
copyfile([directory,’templates’,filesep,’labeling’,filesep,’w’,options.lc.general.parcellation,’.nii’],…

Error in ea_extract_timecourses (line 6)
ea_warp_parcellation(options.prefs.pprest,’rest’,options);

Error in ea_createCM_fmri (line 15)
gmtc=ea_extract_timecourses(options);

Error in ea_perform_lc (line 81)
[fMRI_CM, gmtc]=ea_createCM_fmri(options);

Error in ea_autocoord (line 179)
ea_perform_lc(options);

Error in ea_run (line 96)
ea_autocoord(options);

Error in lead_connectome>runsavebutn_Callback (line 317)
ea_run(‘run’,options);

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in lead_connectome (line 42)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)lead_connectome(‘runsavebutn_Callback’,hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback

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