[mar]

Thank you very much! Now with your atlas it works! You are so kind.
All the best,
Mar

[mar]

Hi Andy,
I tried what you sugested and same error.
Actually I manually created the atlas using code in labeling2atlas function only selecting the labels I´m interested in: left and right hippocampus. The niftis generated look normal when I display them with spm. Then I tried to visualize the atlas in lead dbs and the same error after a while:

Error using ea_smoothpatch_inversedistance_double
Requested 8774618295792×1 (65376.0GB) array exceeds maximum array size preference. Creation of arrays greater than
this limit may take a long time and cause MATLAB to become unresponsive. See array size limit or preference panel for
more information.

Is it possible to obtain the atlas folder to copy it directly in the atlases folder ready to load it in dbs?
My best,
Mar

[mar]

Hi there!
It happens to me exactly the same but then I got an error about memory.
I run >> ea_labeling2atlas(‘Harvard Oxford Thr25 2mm Whole Brain (Makris 2006)’)
and then try to visualize and I get this:

Generating Atlas table (first run with new atlas only). This may take a while…
Building atlas table…

————————————————————————
Running job #1
————————————————————————
Running ‘Image Calculator’

SPM12: spm_imcalc (v6961) 21:26:20 – 03/07/2018
========================================================================
Warning: The images do not all have the same dimensions. – using 1st image.
Warning: The images do not all have same orientation and/or voxel sizes. – using 1st image.
ImCalc Image: C:\Users\Documents\lead\templates\space\MNI_ICBM_2009b_NLIN_ASYM\atlases\Harvard Oxford Thr25 2mm Whole Brain (Makris 2006) – copia\gm_mask.nii
Done ‘Image Calculator’
Done
Error using ea_smoothpatch_inversedistance_double
Requested 18446744069414588570×1 (17179869184.0GB) array exceeds maximum array size preference. Creation of
arrays greater than this limit may take a long time and cause MATLAB to become unresponsive. See array size
limit or preference panel for more information.

if I type memory I get this:
>> memory
Maximum possible array: 10349 MB (1.085e+10 bytes) *
Memory available for all arrays: 10349 MB (1.085e+10 bytes) *
Memory used by MATLAB: 2101 MB (2.203e+09 bytes)
Physical Memory (RAM): 8071 MB (8.463e+09 bytes)

I changed the preferences in matlab to the maximum
But I don´t think I can run it in this laptop
How can that be 17179869184.0GB? Is it normal? or is there something I´m doing wrong?

Thanks a lot!

[Author]

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