[marucela]

Dear Ningfei,
When I run the ea_genmodlist command, what comes up is the following:
>> ea_genmodlist

ans =

0×0 empty cell array

The option Patient-specific fiber tracts does not appear by default, it only appears when I manually enter the patient’s folder in “specify/Patient”, with which I must choose the seed manually in “Seed Output definition”, which results in this is:
Warning: No anatomy information found! Please put either anat_t1.nii, anat_t2.nii or anat_pd.nii into subject
folder.
> In ea_assignpretra (line 16)
In ea_autocoord (line 76)
In ea_run (line 96)
In lead_mapper>run_button_Callback (line 241)
In gui_mainfcn (line 95)
In lead_mapper (line 42)
In matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)lead_mapper(‘run_button_Callback’,hObject,eventdata,guidata(hObject))
Index exceeds array bounds.

Error in ea_autocoord (line 89)
if ~exist([directory,’raw_’,presentfiles{1}],’file’)

Error in ea_run (line 96)
ea_autocoord(options);

Error in lead_mapper>run_button_Callback (line 241)
ea_run(‘run’,options);

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in lead_mapper (line 42)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)lead_mapper(‘run_button_Callback’,hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

However, in the patient’s folder we have anatomical information, we have the file anat_t2.nii
But, we do not understand why we get the errors that you can see in the screenshot
I will reinstall the Lead Dbs and run all the steps for our project, and I will update you on the results through the slack in which I will join now.
Just in case, we are using the linux ubuntu 16.04 lts
Thank you so much!
Marucela.

[marucela]

Dear Ningfei,
Thank you very much for your prompt response.

The path of my patient is: /home/gabriel/Desktop/GrilloAN
Iinsides the folder connectomes/dMRI under patient folder, I have:
wFTR.mat
wFTR.tkr
wFTR_vox.mat
The version of the Lead DBS that I am using is: v2.1.5

My best regards,

Marucela.

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