[Nabkr]

Thanks a lot Andy.

Best,
Nabin

[Nabkr]

Hi Andy,
Thanks for the reply. But what worked was, I took the VTAs out of the stimulations folder and copied it somewhere else and selected them as seed regions independently rather than selecting as the stimulation scheme. Eventhough it worked, cant really say why the normal way did not.

Thank you.

Regards,
Nabin

[Nabkr]

Many thanks Andy.

Regards,
Nabin

[Nabkr]

Dear Ningfei,
Thank you it worked after I changed the settings as you suggested. But now I got stuck in almost the last step. When I am trying to export 2D slices ouput, it says patient Pre-OP does not exists. Irrespective of the template or atlas I select. Am I missing something ?

Exporting 2D slice output…
Error using spm_vol>spm_vol_hdr (line 80)
File “Patient Pre-OP” does not exist.

Error in spm_vol (line 61)
v = spm_vol_hdr(deblank(P(i,:)));

Error in ea_assignbackdrop (line 105)
varargout{1}=spm_vol(bdstring);

Error in ea_writeplanes (line 69)
[Vtra,Vcor,Vsag]=ea_assignbackdrop(options.d2.backdrop,options,’Patient’);

Error in ea_write (line 48)
cuts=ea_writeplanes(options);

Error in ea_autocoord (line 257)
ea_write(options)

Error in ea_run (line 96)
ea_autocoord(options);

Error in lead_dbs>run_button_Callback (line 187)
ea_run(‘run’,options);

Error in gui_mainfcn (line 95)
feval(varargin{:});

Error in lead_dbs (line 43)
gui_mainfcn(gui_State, varargin{:});

Error in
matlab.graphics.internal.figfile.FigFile/read>@(hObject,eventdata)lead_dbs(‘run_button_Callback’,hObject,eventdata,guidata(hObject))
Error while evaluating UIControl Callback.

Thank you.

Regards,
Nabin

[Nabkr]

Thanks Andy. Yes, I checked the recontruction as explained also in the video and the 3D visualization also works fine. also, I figured out that its my Matlab, somehow it gets stuck after some steps. I closed all, restarted the matlab again and did write out to 2D and it works fine now.

Many thanks again for your prompt support. Really appreciate.

Best,
Nabin

[Nabkr]

Thank you Andy. Got through that step. But it is taking taking really long to write out 2D . Is it usual ? Also in the tutorial video it says it takes a while, so was wondering if it is something that needs overnight ? Say in a PC with 8GB RAM, 3 ghz processor running MATLAB2015.

Thanks again.

Best,
Nabin

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