Profile for User: Vinny

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  • 03/30/2017 at 1:30 PM in reply to: VAT – connectome #2351
    Vinny
    Participant

    Thank you Ningfei and Andreas!

    03/29/2017 at 11:21 PM in reply to: VAT – connectome #2344
    Vinny
    Participant

    Hello Ningfei,
    I was able to install hotfix and got no error message. I then clicked on “Structural Group Connectome (Horn 2013)’, and the the structural group connectome 2013 began downloading, but got the following error message in the matlab gui:

    Error using unzip (line 84)
    Invalid zip file
    “C:\Users\Vinit\Downloads\lead\connectomes\dMRI\groupconnectome2013.zip”.
    Error in ea_checkinstall>ea_downloadasset (line 109)
    unzip(destination, loc);
    Error in ea_checkinstall (line 66)
    success=ea_downloadasset(‘structural group connectome
    (Horn 2013)’,…
    Error in ea_menuinstall (line 9)
    success=ea_checkinstall(cmd);
    Error while evaluating Menu Callback

    I see the zipper folder titled groupconnectome2013 in the lead folder. I’m assuming it is still being worked on. Thanks for your assistance.

    Regards/Vinit

    03/28/2017 at 11:05 PM in reply to: VAT – connectome #2337
    Vinny
    Participant

    Hi Ningfei,

    Thanks for your reply. I use the most recent downloaded release (version 1.6.3.1), and when I click the ‘Install -> Apply Hotfix’ menu, I get the following error messages: 1) hotfix dataset could not be installed; 2) Hotfix does not exist or failed to apply hotfix! Please wait for the next release. I don’t use the git version, but I’ll give it a try. But please let me know when you fix it so that I may update/download the updated version.

    Regards,
    Vinit

    03/28/2017 at 3:47 AM in reply to: VAT – connectome #2327
    Vinny
    Participant

    Under the Install Menu (lead-DBS), I clicked on ‘Structural Group Connectome (Horn 2013)’ but then a box appears stating ‘Please confirm to start downloading dataset: macaque’. Even if I click Proceed, it states that ‘macaque data set could not be installed.’

    03/28/2017 at 3:01 AM in reply to: Normalization #2319
    Vinny
    Participant

    Thanks Andy, it worked.

    Regards, Vinit

    03/27/2017 at 11:47 PM in reply to: Normalization #2313
    Vinny
    Participant

    Thanks for your reply Andy. I’ve looked in the patient folder and cannot find these deformation files. I had used ANTs SyN for the patient to template nonlinear coregistration. The matlab files in the patient folder are:
    postop_ct2anat_t1_ants1
    anat_t12postop_ct_ants1
    ea_coregctmethod_applied
    ea_normmethod_applied
    ea_reconstruction
    ea_ui
    ea_stats_backup
    ea_stats
    ea_stats_group_1

    The ea_normmethod_applied file contains only text stating ‘ea_normalize_ants’.

    Yes, I’d like to apply the deformation to one of the fiber tracts that I’ve generated and exported as a 3D object using other software. I was able to use SPM to normalize the tract to the MNI/ICBM template and then use add the normalized tract to the 3d scene. However, I’d prefer using the already calculated deformations from lead-DBS.

    Thanks for your help.

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